vepain website Scientific website
Posts with the tag software:

Khloraa Scaffolding

A directed graph representing links between oriented contigs. A red path shows the scaffolding result.

Chloroplast genome scaffolding toolkit.

Reverse Symmetric Graph

A directed graph with several coloured parts.

Graph data structure and some algorithms to store succession relationships between DNA fragments.

The main example is overlaps between DNA fragments: each overlap corresponds to one oriented DNA fragments that overlaps another oriented one, where the orientation can be the unchanged fragment’s sequence or its reverse-complement.


Here is the list of packages I evolved in.