Graph data structure and some algorithms to store succession relationships between DNA fragments.

The main example is overlaps between DNA fragments: each overlap corresponds to one oriented DNA fragments that overlaps another oriented one, where the orientation can be the unchanged fragment’s sequence or its reverse-complement.

Here is the list of packages I evolved in.

I am currently a postdoc researcher in computational biology at the Mathematic department of Simon Fraser University (Canada).

I did my PhD study in the Inria Rennes lab’ (FR), at the GenScale team. After one year of research at home (i.e. unemployed, research activity validated by the French national university commission of informatics - CNU27), I joined the AlgoLab research group at the University of Milano-Bicocca for a one year postdoc contract.

My research activities are about graph algorithms and mixed-integer linear programming applied to genomics: scaffolding, haplotyping and plasmid binning.

I am the secretary of the non-profit organization Alia for academic freedom and the associate treasurer of the Nicomaque association for the popularisation of doctoral science. I also play the piano (you can find here some improvisations!)

📨 Professional e-mail address <first_name><last_name><at>disroot.org