Graph data structure and some algorithms to store succession relationships between DNA fragments.

The main example is overlaps between DNA fragments: each overlap corresponds to one oriented DNA fragments that overlaps another oriented one, where the orientation can be the unchanged fragment’s sequence or its reverse-complement.

Here is the list of packages I evolved in.

I am currently a postdoc researcher in computational biology in the AlgoLab research group at the University of Milano-Bicocca.

I did my PhD study in the Inria Rennes lab’ (FR), at the GenScale team.

My works are about genome assembly and scaffolding. For this purpose, I implement graph algorithms and graph structures, and I formalise these problems thanks to mathematical programming.

I am member of the non-profit organization ALIA for academic freedom and the associate treasurer of the Nicomaque association for the popularisation of doctoral science. I also play the piano (you can find here some improvisations!)

📨 Professional e-mail address <first_name><last_name><at>disroot.org