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I am a 3rd year PhD student at Inria Rennes lab’ (FR), at the GenScale team.

I am working on genome assembly and scaffolding. For this purpose, I am implementing graphs’ algorithms and graphs’ structures, and I am formalising these problems thanks to linear programming.

I also play the piano. You can find here some improvisations ;)

πŸ‘€ Work colleagues

πŸ‘€ PhD Inria main supervisor Rumen Andonov

πŸ‘€ PhD INRAe main supervisor Jean-FranΓ§ois Gibrat

πŸ‘€ PhD second supervisor Dominique Lavenier

πŸ“œ CV HAL victor-epain

🦣 Mastodon @vepain@sciences.re (to be preferred)

𝕏 Twitter @VictorEpain (will maybe suppress)

🦊 GitLab @vepain (can be deleted)

🐱 GitHub vepain

🎹 Piano @ProfesseurChep

πŸ“« Contact

πŸ“¨ Inria laboratory e-mail <first_name>.<last_name><at>inria.fr

πŸ“¨ Professional out of Inria lab’ <first_name>.<last_name><at>laposte.net


You can find my CV below partitioned into several categories.

πŸ—£οΈ πŸ“° Accepted Talks & Papers

2023

ROADEF2023

2022

ROADEF2022

JOBIM2022

DSB2022

  • short abstract: The reverse complement symmetry advantage of DNA fragments relationships for their storage in a directed graph
  • talk

2021

BiATA2021

SeqBIM2021 Lyon

🏫 Teaching

2021

Algorithmic Methods for Graph

Level: Third year Bachelor (INFO & MIAGE)

Exercises lectures: 40h

Operational Research

Level: First year Master (MIAGE)

Practical tutorial: 12h

Algorithmic for Bioinformatic

Level: Second year Master (Bioinformatic)

Lecture: 2h

Exercises lectures: 4h

Practical tutorial: 6h

2020

Algorithmic Methods for Graph

Level: Third year Bachelor (INFO & MIAGE)

Exercises lectures: 40h

Operational Research

Level: First year Master (MIAGE)

Practical tutorial: 12h

Statements and organisations of the practical tutorials have been rewritten to use PuLP Python package. The new versions are currently being taught for M1 MIAGE/INFO and M2 Bioinformatic Operational Research classes.

πŸ‘₯ Collaborations

2021-2022

Heinrich Heine University DΓΌsseldorf from December 2021 to January 2022

πŸ₯Ό Collective Responsibilities

2023

Data Knowledge Management IRISA/Inria Department

  • organisation of monthly department seminar
  • organisation of departments days (1.5 days)
    • round table about how we can participate in the laboratory’s and university’s activities (teaching, council etc.)
    • round table about scientific publication system

Nicomaque PhD association

  • Treasurer

2022

Data Knowledge Management IRISA/Inria Department

  • organisation of monthly department seminar
  • organisation of departments days (1.5 days)

JOBIM2022 French national conference

  • referent organiser for social activity

Organisation of internship oral training for the first and second Master degrees students

2021

Supervisor of Pauline Hamon-Giraud (first Master degree student in bioinformatic)

Organisation of internship oral training for the second Master degree students

πŸ’¬ Vulgarisation

2022

Organisation of PhD vulgarisation film festival Sciences en Cour[t]s

2021

Sciences en Cour[t]s

πŸ“‘ Working Papers

2023

Global exact optimisations for chloroplast genome multimeric forms scaffolding

2022

Overlap Graph for Assembling and Scaffolding Algorithms: Paradigm Review and Implementation Proposals