Who am I?

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I am a 3^rd year PhD student at Inria Rennes lab’ (FR), at the GenScale team.

I am working on genome assembly and scaffolding. For this purpose, I am implementing graphs’ algorithms and graphs’ structures, and I am formalising these problems thanks to linear programming.

I also play the piano. You can find here some improvisations ;)

👤 Work colleagues

👤 PhD Inria main supervisor Rumen Andonov

👤 PhD INRAe main supervisor Jean-François Gibrat

👤 PhD second supervisor Dominique Lavenier

🔗 Some links

📜 CV HAL victor-epain

🦣 Mastodon @vepain@sciences.re (to be preferred)

𝕏 Twitter @VictorEpain (will maybe suppress)

🦊 GitLab @vepain (can be deleted)

🐱 GitHub vepain

🎹 Piano @ProfesseurChep

📫 Contact

📨 Inria laboratory e-mail <first_name>.<last_name><at>inria.fr

📨 Professional out of Inria lab’ <first_name>.<last_name><at>laposte.net

You can find my CV below partitioned into several categories.

🗣️ 📰 Accepted Talks & Papers

2023

ROADEF2023

co-chairman for bioinformatic session (Recherche Opérationnelle en Bio-Informatique)
short abstract: Linear Integer Programming Approaches for Chloroplast Genome Scaffolding
talk

2022

ROADEF2022

chairman for bioinformatic session
short abstract: Linear integer programming approach for chloroplast genome scaffolding
talk

JOBIM2022

proceeding: Optimal Scaffolding for Chloroplasts’ Inverted Repeats
talk proceeding act

DSB2022

short abstract: The reverse complement symmetry advantage of DNA fragments relationships for their storage in a directed graph
talk

2021

BiATA2021

extended abstract: Optimal de novo assemblies for chloroplast genomes based on inverted repeats patterns
talk

SeqBIM2021 Lyon

short abstract: The advantage of DNA reads overlaps’ reverse complement symmetry for their storage in an oriented graph
talk

🏫 Teaching

2021

Algorithmic Methods for Graph

Level: Third year Bachelor (INFO & MIAGE)

Exercises lectures: 40h

Operational Research

Level: First year Master (MIAGE)

Practical tutorial: 12h

Algorithmic for Bioinformatic

Level: Second year Master (Bioinformatic)

Lecture: 2h

Exercises lectures: 4h

Practical tutorial: 6h

2020

Algorithmic Methods for Graph

Level: Third year Bachelor (INFO & MIAGE)

Exercises lectures: 40h

Operational Research

Level: First year Master (MIAGE)

Practical tutorial: 12h

Statements and organisations of the practical tutorials have been rewritten to use PuLP Python package. The new versions are currently being taught for M1 MIAGE/INFO and M2 Bioinformatic Operational Research classes.

👥 Collaborations

2021-2022

Heinrich Heine University Düsseldorf from December 2021 to January 2022

ALBI team, welcomed by Gunnar Klau

🥼 Collective Responsibilities

2023

Data Knowledge Management IRISA/Inria Department

organisation of monthly department seminar
organisation of departments days (1.5 days)
- round table about how we can participate in the laboratory’s and university’s activities (teaching, council etc.)
- round table about scientific publication system

Nicomaque PhD association