I am a 3rd year PhD student at Inria Rennes lab’ (FR), at the GenScale team.
I am working on genome assembly and scaffolding. For this purpose, I am implementing graphs’ algorithms and graphs’ structures, and I am formalising these problems thanks to linear programming.
I also play the piano. You can find here some improvisations ;)
👤 Work colleagues
- PhD Inria main supervisor Rumen Andonov
- PhD INRAe main supervisor Jean-François Gibrat
- PhD second supervisor Dominique Lavenier
🔗 Some links
- Mastodon @vepain@sciences.re (to be preferred)
- Twitter @VictorEpain (will maybe suppress)
- GitLab @vepain (can be deleted)
- GitHub vepain
- Piano @ProfesseurChep
📫 Contact
- Inria laboratory e-mail
<first_name>.<last_name><at>inria.fr - Professional out of Inria lab’
<first_name>.<last_name><at>laposte.net
You can find my CV below partitioned into several categories.
🗣️ 📰 Accepted Talks & Papers
2022
- ROADEF2022
- chairman for bioinformatic session
- short abstract: Linear integer programming approach for chloroplast genome scaffolding
- talk
- JOBIM2022
- proceeding: Optimal Scaffolding for Chloroplasts’ Inverted Repeats
- talk
- DSB2022
- short abstract: The reverse complement symmetry advantage of DNA fragments relationships for their storage in a directed graph
- talk
2021
- BiATA2021
- extended abstract: Optimal de novo assemblies for chloroplast genomes based on inverted repeats patterns
- talk
- SeqBIM2021 Lyon
🏫 Teaching
2021
Algorithmic Methods for Graph
- Level: Third year Bachelor (INFO & MIAGE)
- Exercises lectures: 40h
Operational Research
- Level: First year Master (MIAGE)
- Practical tutorial: 12h
Algorithmic for Bioinformatic
- Level: Second year Master (Bioinformatic)
- Lecture: 2h
- Exercises lectures: 4h
- Practical tutorial: 6h
2020
Algorithmic Methods for Graph
- Level: Third year Bachelor (INFO & MIAGE)
- Exercises lectures: 40h
Operational Research
- Level: First year Master (MIAGE)
- Practical tutorial: 12h
Statements and organisations of the practical tutorials have been rewritten to use
PuLPPythonpackage. The new versions are currently being taught for M1 MIAGE/INFO and M2 Bioinformatic Operational Research classes.
👥 Collaborations
2021-2022
- Heinrich Heine University Düsseldorf from December 2021 to January 2022
- ALBI team, welcomed by Gunnar Klau
🥼 Collective Responsibilities
2023
- Data Knowledge Management IRISA/Inria Department
- organisation of monthly department seminar
- organisation of departments days (1.5 days)
- round table about how we can participate in the laboratory’s and university’s activities (teaching, council etc.)
- round table about scientific publication system
- Nicomaque PhD association
- Treasurer
2022
- Data Knowledge Management IRISA/Inria Department
- organisation of monthly department seminar
- organisation of departments days (1.5 days)
- JOBIM2022 French national conference
- referent organiser for social activity
- Organisation of internship oral training for the first and second Master degrees students
2021
- Organisation of internship oral training for the second Master degree students
- Supervisor of Pauline Hamon-Giraud (first Master degree student in bioinformatic)
💬 Vulgarisation
2022
- Organisation of PhD vulgarisation film festival Sciences en Cour[t]s
- the recorded event (FR)
- collaboration with Espace des Sciences for the Fête de la Science
2021
- Sciences en Cour[t]s
- making a 5min animated film: Cocktail de bio-informatique (FR) for PhD vulgarisation film festival
📑 Working Papers
2022
- Overlap Graph for Assembling and Scaffolding Algorithms: Paradigm Review and Implementation Proposals
- N.b.: used as a try of a thesis chapter
- see revsymg software page for more information
💀 Rejected Talks & Papers
🪶 Succeeding is not a magic process, humanism suggests humans are perfectible: papers too!